Zm00001e012376_P003 (Zm00001e012376)

Aliases : Zm00001e012376

Description : component NOT3/5 of mRNA deadenylation CCR4-NOT complex

Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e012376_P003

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00093740	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.08	OrthoFinder output from all 47 species
AMTR_s00012p00217710	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.09	OrthoFinder output from all 47 species
AT5G18230	No alias	transcription regulator NOT2/NOT3/NOT5 family protein	0.06	OrthoFinder output from all 47 species
Adi_g021088	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Aev_g14080	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Ala_g02487	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Als_g59172	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Aob_g23408	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ceric.09G054000.1	Ceric.09G054000	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.05	OrthoFinder output from all 47 species
Cre04.g227350	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.04	OrthoFinder output from all 47 species
Dcu_g13304	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.06	OrthoFinder output from all 47 species
Dde_g50453	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ehy_g01609	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
GSVIVT01033382001	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.08	OrthoFinder output from all 47 species
LOC_Os03g44900.1	LOC_Os03g44900	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.09	OrthoFinder output from all 47 species
Len_g47292	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Lfl_g02194	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.06	OrthoFinder output from all 47 species
MA_10429335g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_16801g0010	No alias	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.05	OrthoFinder output from all 47 species
Mp5g06180.1	No alias	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.02	OrthoFinder output from all 47 species
Msp_g10519	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Nbi_g04925	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ore_g18536	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Pnu_g13489	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Ppi_g05930	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Solyc12g019860.2.1	Solyc12g019860	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.05	OrthoFinder output from all 47 species
Tin_g05223	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006476	protein deacetylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016575	histone deacetylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0035601	protein deacylation	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098732	macromolecule deacylation	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007207	Not_N	4	234
IPR007282	NOT2/3/5_C	687	823

External Links

No external refs found!

Zm00001e012376_P003 (Zm00001e012376)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation