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  5. Zm00001e012060_P001

Zm00001e012060_P001 (Zm00001e012060)


Aliases : Zm00001e012060

Description : component Sec23 of Sec23/24 cargo adaptor subcomplex


Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012060_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT4G14160 No alias Sec23/Sec24 protein transport family protein 0.02 OrthoFinder output from all 47 species
Aev_g04854 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.15 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder output from all 47 species
GSVIVT01018103001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder output from all 47 species
Gb_05558 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
Gb_40586 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
LOC_Os03g53140.2 LOC_Os03g53140 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.04 OrthoFinder output from all 47 species
LOC_Os08g36994.1 LOC_Os08g36994 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
LOC_Os09g28610.1 LOC_Os09g28610 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
Len_g04820 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
MA_392802g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp7g12190.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species
Nbi_g07000 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Ore_g25550 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010932 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.03 OrthoFinder output from all 47 species
Smo107900 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Solyc01g081070.3.1 Solyc01g081070 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006895 Znf_Sec23_Sec24 56 94
IPR007123 Gelsolin-like_dom 625 711
IPR006896 Sec23/24_trunk_dom 127 389
IPR012990 Sec23_24_beta_S 399 499
IPR006900 Sec23/24_helical_dom 511 606
No external refs found!