1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e011569_P001

Zm00001e011569_P001 (SCC2, ATSCC2,...)


Aliases : SCC2, ATSCC2, EMB2773, Zm00001e011569

Description : adherin (SCC2)


Gene families : OG0005074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005074_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011569_P001
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AT5G15540 SCC2, ATSCC2, EMB2773 PHD finger family protein 0.09 OrthoFinder output from all 47 species
Aev_g04894 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16239 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08111 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g31097 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007745 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: CDS=544-5985 0.02 OrthoFinder output from all 47 species
Ceric.14G000800.1 SCC2, ATSCC2,... adherin *(SCC2) & original description: pacid=50634323... 0.04 OrthoFinder output from all 47 species
Cre06.g278269 SCC2, ATSCC2, EMB2773 Cell cycle.mitosis and meiosis.sister chromatid... 0.01 OrthoFinder output from all 47 species
Dcu_g39401 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01011514001 SCC2, ATSCC2, EMB2773 Cell cycle.mitosis and meiosis.sister chromatid... 0.11 OrthoFinder output from all 47 species
Gb_05661 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.04 OrthoFinder output from all 47 species
LOC_Os07g01940.1 SCC2, ATSCC2,... adherin (SCC2) 0.02 OrthoFinder output from all 47 species
Len_g24640 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05042 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436664g0010 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.03 OrthoFinder output from all 47 species
MA_10437214g0020 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.06 OrthoFinder output from all 47 species
Mp4g10640.1 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.04 OrthoFinder output from all 47 species
Ore_g28888 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08021 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g05355 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015105 SCC2, ATSCC2, EMB2773 not classified & original description: CDS=1-927 0.02 OrthoFinder output from all 47 species
Sam_g48907 No alias adherin *(SCC2) & original description: none 0.08 OrthoFinder output from all 47 species
Smo440913 SCC2, ATSCC2, EMB2773 Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
Spa_g04412 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05250 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR024986 Nipped-B_C 1350 1533
IPR026003 Cohesin_HEAT 859 900
No external refs found!