Zm00001e011565_P001 (AGL7, AP1, Zm00001e011565)

Aliases : AGL7, AP1, Zm00001e011565

Description : MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica (sp|q6q9i2|mad15_orysj : 223.0)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e011565_P001
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	ANR1, AGL44,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00047p00190220	AGL4, SEP2,...	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.04	OrthoFinder output from all 47 species
Aev_g07052	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g33717	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g04197	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05477	AGL6	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g11632	AGL65	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g26927	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g17970	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44620.t2	AGL6, Aspi01Gene44620	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene52215.t1	GL19, AGL19,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g09207	AGL13	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g02413	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19342	AGL8, FUL	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g49896	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01015641001	SVP, AGL22	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
GSVIVT01015649001	No alias	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01018446001	AGL42	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01027579001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
LOC_Os02g52340.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os03g54160.1	AGL7, AP1, LOC_Os03g54160	transcription factor (MADS/AGL)	0.08	OrthoFinder output from all 47 species
LOC_Os03g54170.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os07g01820.1	AGL7, AP1, LOC_Os07g01820	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Mp4g12490.1	AGL67	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Nbi_g10109	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g04651	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g40304	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g13602	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14875	AGL65	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003069	No alias	not classified & original description: CDS=1-255	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004031	AGL29	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g48749	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc07g150138.1.1	Solyc07g150138	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc10g017630.3.1	SOC1, AGL20,...	MADS-box protein SOC1 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Solyc10g017640.1.1	GL19, AGL19,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc10g080030.2.1	AGL18, Solyc10g080030	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc11g010570.2.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.11	OrthoFinder output from all 47 species
Spa_g26227	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g23260	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g32794	AGL8, FUL	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013738_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e014926_P001	AGL16, Zm00001e014926	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e022819_P002	AGL16, Zm00001e022819	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Zm00001e023825_P002	SVP, AGL22,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e038096_P002	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	92	180

External Links

No external refs found!

Zm00001e011565_P001 (AGL7, AP1, Zm00001e011565)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation