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  5. Zm00001e011342_P004

Zm00001e011342_P004 (Zm00001e011342)


Aliases : Zm00001e011342

Description : transcription factor (NDX)


Gene families : OG0003424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003424_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011342_P004

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00031700 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Adi_g086373 No alias NDX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02709 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22370 No alias NDX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07774 No alias NDX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08164 No alias NDX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os05g09630.1 LOC_Os05g09630 transcription factor (NDX) 0.05 OrthoFinder output from all 47 species
MA_57200g0010 No alias transcription factor (NDX) 0.02 OrthoFinder output from all 47 species
Mp1g16560.1 No alias transcription factor (NDX) 0.05 OrthoFinder output from all 47 species
Msp_g20779 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g43437 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1035.g027924 No alias NDX-type transcription factor & original description: CDS=1-4293 0.03 OrthoFinder output from all 47 species
Sam_g30227 No alias NDX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc09g074330.3.1 Solyc09g074330 transcription factor (NDX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008373 sialyltransferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!