Zm00001e010860_P001 (HRE2, Zm00001e010860)

Aliases : HRE2, Zm00001e010860

Description : transcription factor (ERF)

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e010860_P001
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00232330	ERF110,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AMTR_s00051p00204250	DEAR2,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AT1G28160	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT2G47520	HRE2	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Cba_g24352	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ceric.1Z027000.1	ERF110, Ceric.1Z027000	not classified & original description: pacid=50632868...	0.01	OrthoFinder output from all 47 species
Ceric.35G055900.1	Ceric.35G055900	subgroup ERF-IV/DREB2 transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g06062	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01028050001	HRE2	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
Gb_06962	ERF72, EBP, ATEBP, RAP2.3	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Gb_20532	DEAR3	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Gb_24891	RAP2.12	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Gb_26438	HRE1	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Gb_32995	No alias	Ethylene-responsive transcription factor ERF016...	0.01	OrthoFinder output from all 47 species
LOC_Os01g21120.1	HRE2, LOC_Os01g21120	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
LOC_Os01g64790.1	ERF110, LOC_Os01g64790	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
LOC_Os03g08460.1	RAP2.12, LOC_Os03g08460	Ethylene-responsive transcription factor ERF073...	0.01	OrthoFinder output from all 47 species
LOC_Os05g29810.1	ERF72, EBP,...	transcription factor (ERF)	0.06	OrthoFinder output from all 47 species
LOC_Os05g37640.1	ORA59, LOC_Os05g37640	Ethylene-responsive transcription factor 15...	0.03	OrthoFinder output from all 47 species
LOC_Os06g11940.1	LOC_Os06g11940	Ethylene-responsive transcription factor ERF017...	0.05	OrthoFinder output from all 47 species
LOC_Os07g22730.1	ERF1, ATERF1,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Pnu_g08048	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Pnu_g10528	CRF4	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g07532	CRF3	subgroup ERF-VI transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002282	No alias	subgroup ERF-VI transcription factor & original...	0.01	OrthoFinder output from all 47 species
Solyc09g075420.3.1	HRE2, Solyc09g075420	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e000608_P002	Rap2.6L, Zm00001e000608	Ethylene-responsive transcription factor ERF073...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	117	165

External Links

No external refs found!

Zm00001e010860_P001 (HRE2, Zm00001e010860)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation