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  5. Zm00001e010547_P001

Zm00001e010547_P001 (LHCB4.1, Zm00001e010547)


Aliases : LHCB4.1, Zm00001e010547

Description : component LHCb4 of LHC-II complex


Gene families : OG0003968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010547_P001
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00239610 LHCB4.2,... Photosynthesis.photophosphorylation.photosystem... 0.17 OrthoFinder output from all 47 species
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.2 OrthoFinder output from all 47 species
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.21 OrthoFinder output from all 47 species
Adi_g047687 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.17 OrthoFinder output from all 47 species
Adi_g079332 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Aev_g13668 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g11240 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.16 OrthoFinder output from all 47 species
Als_g08280 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Aob_g39718 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Aop_g05395 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Aop_g05396 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Aspi01Gene47726.t1 LHCB4.1, Aspi01Gene47726 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0173.g055756 LHCB4.2 component *(LHCb4) of LHC-II complex & original... 0.1 OrthoFinder output from all 47 species
Cba_g11090 No alias component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g34516 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.05G075200.1 LHCB4.2, Ceric.05G075200 component *(LHCb4) of LHC-II complex & original... 0.27 OrthoFinder output from all 47 species
Ceric.06G083500.1 LHCB4.2, Ceric.06G083500 not classified & original description: pacid=50619025... 0.05 OrthoFinder output from all 47 species
Ceric.22G069400.1 LHCB4.1, Ceric.22G069400 component *(LHCb4) of LHC-II complex & original... 0.23 OrthoFinder output from all 47 species
Cre17.g720250 LHCB4.3 Photosynthesis.photophosphorylation.photosystem... 0.12 OrthoFinder output from all 47 species
Dac_g23809 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.16 OrthoFinder output from all 47 species
Dcu_g45560 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.15 OrthoFinder output from all 47 species
Dcu_g49585 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.23 OrthoFinder output from all 47 species
Dde_g10605 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g03348 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Ehy_g21710 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Gb_13368 LHCB4.3 component LHCb4 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Gb_38595 LHCB4.1 component LHCb4 of LHC-II complex 0.12 OrthoFinder output from all 47 species
LOC_Os07g37240.1 LHCB4.1, LOC_Os07g37240 component LHCb4 of LHC-II complex 0.21 OrthoFinder output from all 47 species
Len_g31128 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Len_g34078 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
MA_129206g0010 LHCB4.2 component LHCb4 of LHC-II complex 0.15 OrthoFinder output from all 47 species
Mp1g16850.1 LHCB4.1 component LHCb4 of LHC-II complex 0.25 OrthoFinder output from all 47 species
Msp_g07941 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g01855 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.17 OrthoFinder output from all 47 species
Pir_g15460 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g33035 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Pp3c12_25460V3.1 LHCB4.1, Pp3c12_25460 light harvesting complex photosystem II 0.08 OrthoFinder output from all 47 species
Ppi_g08836 LHCB4.3 component *(LHCb4) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15010 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016319 LHCB4.1 component *(LHCb4) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Smo149722 LHCB4.2 Photosynthesis.photophosphorylation.photosystem... 0.1 OrthoFinder output from all 47 species
Solyc09g014520.3.1 LHCB4.1, Solyc09g014520 component LHCb4 of LHC-II complex 0.22 OrthoFinder output from all 47 species
Spa_g08357 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g50929 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g50930 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50931 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g08576 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 64 260
No external refs found!