Zm00001e010116_P001 (ATUBP1, UBP1, Zm00001e010116)

Aliases : ATUBP1, UBP1, Zm00001e010116

Description : deubiquitinase (UBP1-2)

Gene families : OG0003367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003367_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e010116_P001

Target	Alias	Description	ECC score	Gene Family Method
AT1G04860	UBP2, ATUBP2	ubiquitin-specific protease 2	0.04	OrthoFinder output from all 47 species
Adi_g019437	UBP2, ATUBP2	deubiquitinase *(UBP1-2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02672	UBP2, ATUBP2	deubiquitinase *(UBP1-2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021053001	UBP2, ATUBP2	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
MA_609805g0010	UBP2, ATUBP2	deubiquitinase (UBP1-2)	0.02	OrthoFinder output from all 47 species
Ore_g37204	UBP2, ATUBP2	deubiquitinase *(UBP1-2) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001607	Znf_UBP	80	182
IPR001394	Peptidase_C19_UCH	220	1056

External Links

No external refs found!