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  5. Zm00001e009946_P001

Zm00001e009946_P001 (AMY1, ATAMY1, Zm00001e009946)


Aliases : AMY1, ATAMY1, Zm00001e009946

Description : alpha amylase


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e009946_P001
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Adi_g022283 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16401 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14201 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03724 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38425.t1 AMY2, ATAMY2,... alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035819 AMY1, ATAMY1 alpha amylase & original description: CDS=222-1931 0.02 OrthoFinder output from all 47 species
Ceric.17G028300.1 AMY1, ATAMY1,... alpha amylase & original description: pacid=50617601... 0.03 OrthoFinder output from all 47 species
Dac_g26015 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42728 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08616 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031742001 AMY1, ATAMY1 Alpha-amylase OS=Vigna mungo 0.03 OrthoFinder output from all 47 species
Gb_02250 AMY3, ATAMY3 alpha amylase 0.03 OrthoFinder output from all 47 species
Gb_04800 AMY2, ATAMY2 alpha amylase 0.04 OrthoFinder output from all 47 species
Gb_04803 AMY2, ATAMY2 alpha amylase 0.03 OrthoFinder output from all 47 species
LOC_Os01g25510.1 AMY1, ATAMY1,... Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g52710.1 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
LOC_Os06g49970.2 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
LOC_Os08g36900.1 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species
LOC_Os09g28400.1 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
LOC_Os09g28420.1 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
Len_g16715 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25602 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02338 AMY2, ATAMY2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12491 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05235 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 369 427
IPR006047 Glyco_hydro_13_cat_dom 55 348
No external refs found!