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  5. Zm00001e009851_P003

Zm00001e009851_P003 (Zm00001e009851)


Aliases : Zm00001e009851

Description : Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana (sp|q8vyd6|pp374_arath : 552.0)


Gene families : OG0006414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006414_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e009851_P003
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00208640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g10690... 0.06 OrthoFinder output from all 47 species
Adi_g058510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007615 No alias not classified & original description: CDS=350-1960 0.03 OrthoFinder output from all 47 species
Dcu_g19046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035517001 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
LOC_Os09g26190.1 LOC_Os09g26190 Pentatricopeptide repeat-containing protein At5g10690... 0.13 OrthoFinder output from all 47 species
Lfl_g35563 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Nbi_g20338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20397 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g18420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020562 No alias not classified & original description: CDS=129-2003 0.02 OrthoFinder output from all 47 species
Sam_g19413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo52692 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.05 OrthoFinder output from all 47 species
Solyc08g069010.4.1 Solyc08g069010 Pentatricopeptide repeat-containing protein At5g10690... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 283 310
IPR002885 Pentatricopeptide_repeat 319 345
IPR002885 Pentatricopeptide_repeat 93 140
IPR002885 Pentatricopeptide_repeat 205 252
No external refs found!