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  5. Zm00001e009613_P002

Zm00001e009613_P002 (SMG7, Zm00001e009613)


Aliases : SMG7, Zm00001e009613

Description : SMG7 Nonsense-Mediated mRNA Decay protein


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e009613_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00170580 SMG7,... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 OrthoFinder output from all 47 species
AT5G19400 SMG7 Telomerase activating protein Est1 0.06 OrthoFinder output from all 47 species
Adi_g013417 SMG7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15194 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Aop_g62611 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Cba_g15989 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Ceric.27G021400.1 SMG7, Ceric.27G021400 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Dac_g12623 SMG7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007284001 No alias Protein SMG7L OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01033622001 SMG7 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.05 OrthoFinder output from all 47 species
GSVIVT01037278001 SMG7 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 OrthoFinder output from all 47 species
Gb_21699 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species
LOC_Os08g21350.1 SMG7, LOC_Os08g21350 SMG7 Nonsense-Mediated mRNA Decay protein 0.07 OrthoFinder output from all 47 species
Len_g48171 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
MA_32980g0010 SMG7 Protein SMG7 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp8g12080.1 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
Msp_g18455 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Msp_g42720 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Ore_g13643 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g34667 SMG7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43522 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Pir_g07446 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Pir_g24299 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025727 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Sam_g25590 No alias Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Solyc12g019960.2.1 SMG7, Solyc12g019960 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species
Spa_g17881 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Spa_g19045 SMG7 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR018834 DNA/RNA-bd_Est1-type 204 538
IPR019458 Est1-like_N 72 190
No external refs found!