- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Zm00001e009485
Description : component Pcf11 of Cleavage Factor II (CF-IIm) complex
Gene families : OG0001185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001185_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00040p00210200 | evm_27.TU.AmTr_v1... | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g019422 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g060938 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g18258 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g18266 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g10884 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g11854 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g21890 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g23728 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32504 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g60779 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g04503 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g13602 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g22117 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g31315 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0116.g046372 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g77134 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G047300.1 | Ceric.04G047300 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.20G037600.1 | Ceric.20G037600 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.39G023900.1 | PCFS4, Ceric.39G023900 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000396.25 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.01 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000396.26 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.01 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001628.5 | PCFS4 | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g13952 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g09800 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.11 | OrthoFinder output from all 47 species | |
| Dde_g00986 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g07114 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g07144 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01012646001 | PCFS4 | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.13 | OrthoFinder output from all 47 species | |
| GSVIVT01033783001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.14 | OrthoFinder output from all 47 species | |
| Gb_21315 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.03 | OrthoFinder output from all 47 species | |
| Gb_26268 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os08g08830.1 | PCFS4, LOC_Os08g08830 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os09g39270.1 | LOC_Os09g39270 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.08 | OrthoFinder output from all 47 species | |
| Len_g08651 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g09019 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g19078 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g11409 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g16594 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.09 | OrthoFinder output from all 47 species | |
| MA_10040687g0010 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.02 | OrthoFinder output from all 47 species | |
| MA_10433250g0020 | PCFS4 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.02 | OrthoFinder output from all 47 species | |
| MA_132868g0010 | No alias | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| Mp8g18940.1 | No alias | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.09 | OrthoFinder output from all 47 species | |
| Msp_g31704 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g01471 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g08557 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g43016 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.09 | OrthoFinder output from all 47 species | |
| Pir_g02318 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g24250 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g49630 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57483 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012185 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g12428 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g009120.4.1 | Solyc09g009120 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g083590.2.1 | Solyc10g083590 | component Pcf11 of Cleavage Factor II (CF-IIm) complex | 0.1 | OrthoFinder output from all 47 species | |
| Spa_g05766 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g48755 | No alias | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g06139 | PCFS4 | component *(Pcf11) of Cleavage Factor II (CF-IIm)... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| CC | GO:0018995 | host cellular component | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| CC | GO:0033643 | host cell part | IEP | HCCA |
| CC | GO:0033646 | host intracellular part | IEP | HCCA |
| CC | GO:0033647 | host intracellular organelle | IEP | HCCA |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| CC | GO:0042025 | host cell nucleus | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |