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  5. Zm00001e006853_P001

Zm00001e006853_P001 (Zm00001e006853)


Aliases : Zm00001e006853

Description : no hits & (original description: none)


Gene families : OG0004660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006853_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00137580 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00137690 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT1G13160 No alias ARM repeat superfamily protein 0.07 OrthoFinder output from all 47 species
AT4G31520 No alias SDA1 family protein 0.04 OrthoFinder output from all 47 species
Adi_g053627 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g60006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g011007 No alias not classified & original description: CDS=328-2775 0.02 OrthoFinder output from all 47 species
Cba_g26211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G033500.1 Ceric.37G033500 not classified & original description: pacid=50616272... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.36 No alias No description available 0.09 OrthoFinder output from all 47 species
Cre06.g277050 No alias No description available 0.11 OrthoFinder output from all 47 species
Dcu_g12020 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000585001 No alias No description available 0.08 OrthoFinder output from all 47 species
Gb_20290 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g53770.1 LOC_Os04g53770 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Len_g13280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_1537g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_29597g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g43205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo113277 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc12g099890.2.1 Solyc12g099890 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Spa_g06214 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012977 SDA1_N 88 139
IPR007949 SDA1_C 448 830
No external refs found!