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  5. Zm00001e006031_P002

Zm00001e006031_P002 (VPS35B, Zm00001e006031)


Aliases : VPS35B, Zm00001e006031

Description : component VPS35 of Retromer protein recycling complex


Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006031_P002
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT2G17790 ZIP3, VPS35A VPS35 homolog A 0.1 OrthoFinder output from all 47 species
AT3G51310 VPS35C VPS35 homolog C 0.04 OrthoFinder output from all 47 species
Adi_g011699 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
Aev_g16183 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.08 OrthoFinder output from all 47 species
Ala_g07415 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.06 OrthoFinder output from all 47 species
Als_g17864 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Aob_g02341 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Aop_g01821 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.05 OrthoFinder output from all 47 species
Ceric.32G010800.1 VPS35B, Ceric.32G010800 component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Ceric.32G026000.1 VPS35B, Ceric.32G026000 component *(VPS35) of Retromer protein recycling complex... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001086.22 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.01 OrthoFinder output from all 47 species
Dcu_g44008 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.15 OrthoFinder output from all 47 species
Dde_g10908 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
GSVIVT01009948001 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.06 OrthoFinder output from all 47 species
Gb_38584 VPS35B component VPS35 of Retromer protein recycling complex 0.04 OrthoFinder output from all 47 species
LOC_Os03g58700.1 VPS35B, LOC_Os03g58700 component VPS35 of Retromer protein recycling complex 0.17 OrthoFinder output from all 47 species
Lfl_g08397 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.08 OrthoFinder output from all 47 species
MA_9038g0010 ZIP3, VPS35A component VPS35 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species
Msp_g00699 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.05 OrthoFinder output from all 47 species
Nbi_g11981 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
Ppi_g04632 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Sam_g29536 No alias component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Smo167991 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.04 OrthoFinder output from all 47 species
Solyc02g083560.3.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.14 OrthoFinder output from all 47 species
Solyc03g033400.4.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.08 OrthoFinder output from all 47 species
Spa_g15075 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.09 OrthoFinder output from all 47 species
Tin_g02135 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0030906 retromer, cargo-selective complex IEA Interproscan
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR005378 Vps35 22 758
No external refs found!