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  5. Zm00001e005848_P001

Zm00001e005848_P001 (Zm00001e005848)


Aliases : Zm00001e005848

Description : S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Oryza sativa subsp. japonica (sp|q8h8n3|tyw1_orysj : 970.0)


Gene families : OG0006618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005848_P001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT1G75200 No alias flavodoxin family protein / radical SAM domain-containing protein 0.03 OrthoFinder output from all 47 species
Aev_g01493 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.01 OrthoFinder output from all 47 species
Ala_g35438 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.04 OrthoFinder output from all 47 species
Ceric.05G054200.1 Ceric.05G054200 tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Cre14.g623300 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.04 OrthoFinder output from all 47 species
Dcu_g14137 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01009707001 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.03 OrthoFinder output from all 47 species
LOC_Os03g56390.1 LOC_Os03g56390 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.08 OrthoFinder output from all 47 species
Lfl_g35032 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
MA_10429464g0010 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.02 OrthoFinder output from all 47 species
Mp5g22650.1 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.08 OrthoFinder output from all 47 species
Ore_g07642 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012245 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13888 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.07 OrthoFinder output from all 47 species
Solyc04g080340.3.1 Solyc04g080340 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.04 OrthoFinder output from all 47 species
Tin_g22027 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0010181 FMN binding IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR008254 Flavodoxin/NO_synth 47 189
IPR013917 tRNA_wybutosine-synth 508 571
IPR007197 rSAM 325 505
No external refs found!