Zm00001e005420_P001 (Zm00001e005420)

Aliases : Zm00001e005420

Description : RNA helicase (Prp28)

Gene families : OG0002793 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002793_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e005420_P001
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
AT2G33730	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	OrthoFinder output from all 47 species
Aob_g03468	No alias	RNA helicase *(SMA1) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g12474	No alias	RNA helicase *(SMA1) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g04013	No alias	RNA helicase *(SMA1) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os03g50090.2	LOC_Os03g50090	RNA helicase (Prp28)	0.07	OrthoFinder output from all 47 species
Len_g04799	No alias	RNA helicase *(SMA1) & original description: none	0.02	OrthoFinder output from all 47 species
MA_90357g0010	No alias	DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Nbi_g06235	No alias	RNA helicase *(SMA1) & original description: none	0.02	OrthoFinder output from all 47 species
Smo149865	No alias	RNA processing.RNA splicing.spliceosome...	0.08	OrthoFinder output from all 47 species
Solyc02g081290.4.1	Solyc02g081290	RNA helicase (Prp28)	0.03	OrthoFinder output from all 47 species
Spa_g30637	No alias	RNA helicase *(SMA1) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	587	695
IPR011545	DEAD/DEAH_box_helicase_dom	362	552

External Links

No external refs found!