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  5. Zm00001e005218_P001

Zm00001e005218_P001 (FdC2, Zm00001e005218)


Aliases : FdC2, Zm00001e005218

Description : Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana (sp|o23344|fdc1_arath : 160.0)


Gene families : OG0007333 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007333_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005218_P001
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00044800 FdC2,... Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AT4G14890 FdC2 2Fe-2S ferredoxin-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g117987 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.02 OrthoFinder output from all 47 species
Ala_g05506 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.04 OrthoFinder output from all 47 species
Aop_g01954 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene20345.t1 FdC2, Aspi01Gene20345 ferredoxin targeted to non-NADP reduction & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0074.g037536 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.02 OrthoFinder output from all 47 species
Cre07.g334800 FdC2 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g37722 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.05 OrthoFinder output from all 47 species
Ehy_g10832 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01017981001 FdC2 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_40918 FdC2 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os03g45710.1 FdC2, LOC_Os03g45710 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Mp5g15920.1 FdC2 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g11679 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.02 OrthoFinder output from all 47 species
Ore_g45396 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.02 OrthoFinder output from all 47 species
Pnu_g00441 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.04 OrthoFinder output from all 47 species
Smo69317 FdC2 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Tin_g01478 FdC2 ferredoxin targeted to non-NADP reduction & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001041 2Fe-2S_ferredoxin-type 56 126
No external refs found!