1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e005060_P001

Zm00001e005060_P001 (Zm00001e005060)


Aliases : Zm00001e005060

Description : VAN3-binding protein OS=Arabidopsis thaliana (sp|q8w4k5|vab_arath : 254.0)


Gene families : OG0001358 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001358_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005060_P001
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00139910 evm_27.TU.AmTr_v1... VAN3-binding protein OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G43870 No alias Plant protein of unknown function (DUF828) with plant... 0.03 OrthoFinder output from all 47 species
Ala_g06549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07023 FKD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0197.g057327 No alias regulatory component *(ALIS) of phospholipid flippase... 0.03 OrthoFinder output from all 47 species
Ceric.29G086900.1 Ceric.29G086900 not classified & original description: pacid=50625260... 0.03 OrthoFinder output from all 47 species
Dac_g12672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19722 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035642001 No alias VAN3-binding protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_33098 No alias VAN3-binding protein OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g41140.1 LOC_Os12g41140 VAN3-binding protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g20147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15899 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo268691 No alias VAN3-binding protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc08g066860.2.1 Solyc08g066860 VAN3-binding protein OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Tin_g09364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002903_P001 Zm00001e002903 VAN3-binding protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013666 PH_pln 359 463
IPR008546 VAN3-bd-like_auxin_canal 19 298
No external refs found!