Zm00001e004048_P002 (RAP2.12, Zm00001e004048)

Aliases : RAP2.12, Zm00001e004048

Description : transcription factor (ERF)

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e004048_P002
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00238800	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AT4G18450	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G39780	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G07310	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G13330	Rap2.6L	related to AP2 6l	0.03	OrthoFinder output from all 47 species
AT5G13910	LEP	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT5G61890	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g008628	DEAR1, CEJ1, ATERF#011	subgroup ERF-II transcription factor *(ERF19/20) &...	0.02	OrthoFinder output from all 47 species
Adi_g018599	No alias	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g073952	tny	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aev_g04879	No alias	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g08193	DEAR1, CEJ1, ATERF#011	subgroup ERF-II transcription factor *(ERF19/20) &...	0.03	OrthoFinder output from all 47 species
Aev_g28072	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g54778	DEAR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g38999	ORA47	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05550.t1	Aspi01Gene05550	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene63652.t1	RAP2.2, Aspi01Gene63652	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g07845	ERF72, EBP, ATEBP, RAP2.3	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Cba_g13419	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g20722	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22237	RAP2.4	subgroup ERF-I transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g26938	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Cba_g44548	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dac_g09467	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g26333	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g02635	TINY2	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
LOC_Os01g54890.1	ERF-1, ATERF-1,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
LOC_Os02g38090.1	ESR1, DRN, LOC_Os02g38090	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os06g03670.1	DREB1A, ATCBF3,...	transcription factor (DREB)	0.01	OrthoFinder output from all 47 species
LOC_Os09g11460.1	HRE1, LOC_Os09g11460	Ethylene-responsive transcription factor ERF073...	0.02	OrthoFinder output from all 47 species
Lfl_g01837	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Mp7g09350.1	ERF-1, ATERF-1	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Nbi_g02156	No alias	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g20838	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ppi_g02117	HRE1	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15405	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ppi_g55442	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Solyc01g065980.4.1	ERF72, EBP,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc01g090560.4.1	Solyc01g090560	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Solyc04g078640.3.1	DEAR2, Solyc04g078640	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Solyc05g052040.1.1	Solyc05g052040	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Spa_g16569	CRF3	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g20911	ERF110	subgroup ERF-X transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g21202	No alias	subgroup ERF-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g28929	CRF4	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e015869_P001	RAP2.4, Zm00001e015869	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Zm00001e023686_P001	Zm00001e023686	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e034661_P001	ERF110, Zm00001e034661	Ethylene-responsive transcription factor ERF115...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	122	170

External Links

No external refs found!

Zm00001e004048_P002 (RAP2.12, Zm00001e004048)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation