Zm00001e004026_P001 (AT-RSH2, ATRSH2,...)

Aliases : AT-RSH2, ATRSH2, RSH2, Zm00001e004026

Description : Probable GTP diphosphokinase RSH2, chloroplastic OS=Oryza sativa subsp. japonica (sp|q7xap4|rsh2_orysj : 1123.0)

Gene families : OG0001778 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001778_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e004026_P001

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene52141.t1	RSH3, AT-RSH3,...	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.01	OrthoFinder output from all 47 species
Azfi_s0104.g044819	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.01	OrthoFinder output from all 47 species
LOC_Os08g35620.1	AT-RSH2, ATRSH2,...	Probable GTP diphosphokinase RSH2, chloroplastic...	0.03	OrthoFinder output from all 47 species
Len_g13746	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Len_g19883	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.01	OrthoFinder output from all 47 species
Lfl_g17222	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Ore_g44157	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	435	544

External Links

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Zm00001e004026_P001 (AT-RSH2, ATRSH2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation