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  5. Zm00001e003405_P001

Zm00001e003405_P001 (ATMBD8, MBD8, Zm00001e003405)


Aliases : ATMBD8, MBD8, Zm00001e003405

Description : Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana (sp|q9lme6|mbd8_arath : 109.0)


Gene families : OG0010702 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010702_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003405_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009040001 ATMBD8, MBD8 Methyl-CpG-binding domain-containing protein 8... 0.08 OrthoFinder output from all 47 species
Gb_41671 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g37904.2 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.11 OrthoFinder output from all 47 species
LOC_Os08g37920.1 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.07 OrthoFinder output from all 47 species
LOC_Os09g29750.1 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.08 OrthoFinder output from all 47 species
MA_141875g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g48981 ATMBD8, MBD8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g105330.3.1 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 213 257
No external refs found!