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  5. Zm00001e003140_P001

Zm00001e003140_P001 (Zm00001e003140)


Aliases : Zm00001e003140

Description : TRAF1 endomembrane trafficking ATG6-stability regulator protein


Gene families : OG0003009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003140_P001
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00232980 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.03 OrthoFinder output from all 47 species
AT1G04300 No alias TRAF-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g067633 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Aev_g48943 No alias endomembrane trafficking ATG6-stability regulator... 0.05 OrthoFinder output from all 47 species
Als_g21634 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Aspi01Gene01834.t1 Aspi01Gene01834 endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
Cba_g21614 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Ceric.26G060700.1 Ceric.26G060700 endomembrane trafficking ATG6-stability regulator... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001366.11 UBP13 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre12.g494000 No alias Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.03 OrthoFinder output from all 47 species
Dcu_g03193 No alias endomembrane trafficking ATG6-stability regulator... 0.07 OrthoFinder output from all 47 species
Ehy_g07893 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
GSVIVT01018133001 No alias Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.04 OrthoFinder output from all 47 species
LOC_Os01g56800.1 LOC_Os01g56800 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.02 OrthoFinder output from all 47 species
LOC_Os05g43280.1 LOC_Os05g43280 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 OrthoFinder output from all 47 species
LOC_Os12g40520.1 LOC_Os12g40520 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.06 OrthoFinder output from all 47 species
Lfl_g10345 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Lfl_g10347 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
MA_10434493g0010 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.04 OrthoFinder output from all 47 species
Mp8g14880.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.07 OrthoFinder output from all 47 species
Msp_g15370 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Ore_g36306 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Pir_g46286 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Ppi_g15640 No alias endomembrane trafficking ATG6-stability regulator... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018228 No alias endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
Sam_g08395 No alias endomembrane trafficking ATG6-stability regulator... 0.07 OrthoFinder output from all 47 species
Solyc03g005430.4.1 Solyc03g005430 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 OrthoFinder output from all 47 species
Solyc06g053750.3.1 Solyc06g053750 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.02 OrthoFinder output from all 47 species
Solyc09g089560.4.1 Solyc09g089560 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.04 OrthoFinder output from all 47 species
Tin_g12910 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Zm00001e018034_P004 Zm00001e018034 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 76 193
No external refs found!