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  5. Zm00001e002969_P002

Zm00001e002969_P002 (Zm00001e002969)


Aliases : Zm00001e002969

Description : no hits & (original description: none)


Gene families : OG0007339 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002969_P002
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0011.g012632 No alias not classified & original description: CDS=1-3870 0.04 OrthoFinder output from all 47 species
Ceric.25G042600.1 Ceric.25G042600 not classified & original description: pacid=50593354... 0.03 OrthoFinder output from all 47 species
LOC_Os12g38460.1 LOC_Os12g38460 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g58715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g01760.1 RBP1, ATRBP1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g23100.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g49025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 564 634
IPR020683 DUF3447 360 445
IPR020683 DUF3447 101 161
IPR025605 OST-HTH/LOTUS_dom 715 760
No external refs found!