Aliases : NOP56, Zm00001e001676
Description : snoRNP scaffold component Nop56 of snoRNP rRNA methylation complex
Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e001676_P001 | |
Cluster | HCCA: Cluster_59 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00005p00226680 | NOP56,... | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | OrthoFinder output from all 47 species | |
AT1G56110 | NOP56 | homolog of nucleolar protein NOP56 | 0.09 | OrthoFinder output from all 47 species | |
AT3G12860 | No alias | NOP56-like pre RNA processing ribonucleoprotein | 0.04 | OrthoFinder output from all 47 species | |
Adi_g050304 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
Als_g23085 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g11428 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.06 | OrthoFinder output from all 47 species | |
Azfi_s0061.g034932 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g57048 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001073.20 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.04 | OrthoFinder output from all 47 species | |
Cre12.g525200 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.09 | OrthoFinder output from all 47 species | |
Dac_g14259 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g06884 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01008506001 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.06 | OrthoFinder output from all 47 species | |
Gb_05243 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os03g22880.1 | NOP56, LOC_Os03g22880 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.11 | OrthoFinder output from all 47 species | |
Lfl_g03084 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
MA_10434077g0010 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.04 | OrthoFinder output from all 47 species | |
MA_9961528g0010 | NOP56 | Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
Mp2g23840.1 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.1 | OrthoFinder output from all 47 species | |
Ore_g37588 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.06 | OrthoFinder output from all 47 species | |
Pp3c16_5220V3.1 | NOP56, Pp3c16_5220 | homolog of nucleolar protein NOP56 | 0.01 | OrthoFinder output from all 47 species | |
Ppi_g47632 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g10672 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
Smo167367 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | OrthoFinder output from all 47 species | |
Solyc01g100570.4.1 | NOP56, Solyc01g100570 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g48006 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g03400 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
MF | GO:0010181 | FMN binding | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |