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  5. Zm00001e001546_P001

Zm00001e001546_P001 (Zm00001e001546)


Aliases : Zm00001e001546

Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e001546_P001

Target Alias Description ECC score Gene Family Method Actions
AT3G21100 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.04 OrthoFinder output from all 47 species
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.04 OrthoFinder output from all 47 species
Adi_g025310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g073356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g125875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g58788 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene04338.t2 Aspi01Gene04338 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39714 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g51674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.09 OrthoFinder output from all 47 species
LOC_Os03g21140.1 LOC_Os03g21140 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
LOC_Os03g21160.2 LOC_Os03g21160 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.11 OrthoFinder output from all 47 species
Lfl_g23635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_33942g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Ore_g22013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010074 No alias not classified & original description: CDS=287-2170 0.02 OrthoFinder output from all 47 species
Solyc01g008600.4.1 Solyc01g008600 C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species
Solyc11g065320.2.1 Solyc11g065320 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 377 422
IPR000571 Znf_CCCH 234 254
No external refs found!