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  5. Zm00001e001372_P001

Zm00001e001372_P001 (Zm00001e001372)


Aliases : Zm00001e001372

Description : no hits & (original description: none)


Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e001372_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00144740 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT1G15420 No alias CONTAINS InterPro DOMAIN/s: Small-subunit processome,... 0.02 OrthoFinder output from all 47 species
AT5G11240 No alias transducin family protein / WD-40 repeat family protein 0.17 OrthoFinder output from all 47 species
Aev_g13801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g024031 No alias not classified & original description: CDS=168-2150 0.09 OrthoFinder output from all 47 species
Ceric.1Z072200.1 Ceric.1Z072200 not classified & original description: pacid=50586493... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000123.23 No alias No description available 0.06 OrthoFinder output from all 47 species
Cre12.g538500 No alias No description available 0.12 OrthoFinder output from all 47 species
Dcu_g09409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017246001 No alias No description available 0.1 OrthoFinder output from all 47 species
GSVIVT01035079001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_29253 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os01g46060.1 LOC_Os01g46060 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os03g18840.1 LOC_Os03g18840 no hits & (original description: none) 0.19 OrthoFinder output from all 47 species
LOC_Os12g43830.1 LOC_Os12g43830 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10435957g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g00060.1 No alias no hits & (original description: none) 0.17 OrthoFinder output from all 47 species
Ore_g17083 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c7_70V3.1 Pp3c7_70 transducin family protein / WD-40 repeat family protein 0.01 OrthoFinder output from all 47 species
Ppi_g09282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009705 No alias not classified & original description: CDS=1-1959 0.02 OrthoFinder output from all 47 species
Sam_g36919 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo404454 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc03g116380.4.1 Solyc03g116380 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Tin_g02088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 10 35
IPR001680 WD40_repeat 190 228
IPR007148 SSU_processome_Utp12 484 573
No external refs found!