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  5. Zm00001e001294_P001

Zm00001e001294_P001 (Zm00001e001294)


Aliases : Zm00001e001294

Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 120.0)


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e001294_P001
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00053460 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G22330 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 OrthoFinder output from all 47 species
AT1G78260 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 OrthoFinder output from all 47 species
AT5G53720 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g055184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19204 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19813 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene39475.t2 Aspi01Gene39475 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11098 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10873 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01027434001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_07133 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_30439 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os03g17760.1 LOC_Os03g17760 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os06g11730.1 LOC_Os06g11730 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os06g41790.1 LOC_Os06g41790 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g15889 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g31512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429182g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp8g04430.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Pir_g03322 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo100311 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc04g049920.4.1 Solyc04g049920 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.13 OrthoFinder output from all 47 species
Solyc04g074310.4.1 Solyc04g074310 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g044470.3.1 Solyc11g044470 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e023856_P001 Zm00001e023856 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e030837_P006 Zm00001e030837 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005384 manganese ion transmembrane transporter activity IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0030026 cellular manganese ion homeostasis IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 28 85
No external refs found!