Zm00001e001194_P001 (Zm00001e001194)

Aliases : Zm00001e001194

Description : component SRm160 of RNA quality control Exon Junction complex

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e001194_P001

Target	Alias	Description	ECC score	Gene Family Method
AT2G29210	No alias	splicing factor PWI domain-containing protein	0.05	OrthoFinder output from all 47 species
Adi_g019655	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g019656	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.06	OrthoFinder output from all 47 species
Adi_g042058	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
Adi_g057078	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
Adi_g114714	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07320	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Ceric.1Z098000.1	Ceric.1Z098000	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Ceric.35G044600.1	Ceric.35G044600	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Cre16.g678050	No alias	RNA processing.RNA quality control Exon Junction complex...	0.04	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.06	OrthoFinder output from all 47 species
Gb_17180	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Gb_33063	No alias	component SRm160 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species
Len_g50994	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
MA_1065g0010	No alias	component SRm160 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species
Mp8g09170.1	No alias	component SRm160 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species
Pnu_g17589	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Ppi_g42357	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Sam_g07002	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Solyc09g030390.3.1	Solyc09g030390	component SRm160 of RNA quality control Exon Junction complex	0.16	OrthoFinder output from all 47 species
Tin_g23972	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
CC	GO:0016593	Cdc73/Paf1 complex	IEP	HCCA
MF	GO:0031491	nucleosome binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	46	115

External Links

No external refs found!

Zm00001e001194_P001 (Zm00001e001194)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation