- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Zm00001e000552
Description : tRNA thiouridylase
Gene families : OG0006444 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006444_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e000552_P002 | |
| Cluster | HCCA: Cluster_11 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Als_g39229 | No alias | tRNA thiouridylase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g60500 | No alias | tRNA thiouridylase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene43672.t1 | Aspi01Gene43672 | tRNA thiouridylase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0099.g043996 | No alias | tRNA thiouridylase & original description: CDS=1-1530 | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.25G066900.1 | Ceric.25G066900 | tRNA thiouridylase & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g11495 | No alias | tRNA thiouridylase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025274001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g36507 | No alias | tRNA thiouridylase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g01362 | No alias | tRNA thiouridylase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g09930.1 | No alias | tRNA thiouridylase | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g10047 | No alias | tRNA thiouridylase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g23504 | No alias | tRNA thiouridylase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g074100.4.1 | Solyc09g074100 | tRNA thiouridylase | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g17401 | No alias | tRNA thiouridylase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g45744 | No alias | tRNA thiouridylase & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006766 | vitamin metabolic process | IEP | HCCA |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
| BP | GO:0006771 | riboflavin metabolic process | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| MF | GO:0008703 | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity | IEP | HCCA |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | HCCA |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |