1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_41674

Gb_41674


Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana (sp|q9lvq5|pp432_arath : 473.0)


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41674
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 OrthoFinder output from all 47 species
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os03g06910.1 LOC_Os03g06910 Pentatricopeptide repeat-containing protein At5g01110... 0.02 OrthoFinder output from all 47 species
LOC_Os05g19390.1 LOC_Os05g19390 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc05g051340.3.1 Solyc05g051340 group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species
Solyc07g047620.3.1 Solyc07g047620 Pentatricopeptide repeat-containing protein At4g26680,... 0.04 OrthoFinder output from all 47 species
Solyc11g073270.1.1 Solyc11g073270 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 228 256
IPR002885 Pentatricopeptide_repeat 1286 1313
IPR002885 Pentatricopeptide_repeat 1044 1069
IPR002885 Pentatricopeptide_repeat 713 760
IPR002885 Pentatricopeptide_repeat 1141 1190
IPR002885 Pentatricopeptide_repeat 830 875
IPR002885 Pentatricopeptide_repeat 538 587
IPR002885 Pentatricopeptide_repeat 1211 1260
IPR002885 Pentatricopeptide_repeat 899 945
IPR002885 Pentatricopeptide_repeat 258 307
IPR002885 Pentatricopeptide_repeat 967 1015
IPR002885 Pentatricopeptide_repeat 328 377
IPR002885 Pentatricopeptide_repeat 1320 1364
IPR002885 Pentatricopeptide_repeat 433 482
IPR002885 Pentatricopeptide_repeat 1386 1434
IPR002885 Pentatricopeptide_repeat 1454 1484
IPR002885 Pentatricopeptide_repeat 396 425
IPR002885 Pentatricopeptide_repeat 500 531
IPR002885 Pentatricopeptide_repeat 605 637
IPR002885 Pentatricopeptide_repeat 640 671
IPR002885 Pentatricopeptide_repeat 674 706
IPR002885 Pentatricopeptide_repeat 1103 1133
No external refs found!