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Aliases : SCL5
Description : transcription factor (GRAS)
Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00043p00136400 | PAT1,... | RNA biosynthesis.transcriptional activation.GRAS... | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s00088p00161000 | PAT1,... | RNA biosynthesis.transcriptional activation.GRAS... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00186p00018500 | SCL1,... | RNA biosynthesis.transcriptional activation.GRAS... | 0.05 | OrthoFinder output from all 47 species | |
| AT1G21450 | SCL1 | SCARECROW-like 1 | 0.03 | OrthoFinder output from all 47 species | |
| AT1G50600 | SCL5 | scarecrow-like 5 | 0.04 | OrthoFinder output from all 47 species | |
| AT4G17230 | SCL13 | SCARECROW-like 13 | 0.08 | OrthoFinder output from all 47 species | |
| Ala_g02325 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g08305 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g12229 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g14420 | PAT1 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g10196 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g12263 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g17653 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g21753 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g50028 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g05233 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g05274 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g01362 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g26689 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g69531 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene36559.t1 | PAT1, Aspi01Gene36559 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene48189.t1 | PAT1, Aspi01Gene48189 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene64634.t1 | PAT1, Aspi01Gene64634 | GRAS-type transcription factor & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Azfi_s0084.g039020 | PAT1 | GRAS-type transcription factor & original description: CDS=1-2502 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g03969 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G109900.1 | PAT1, Ceric.01G109900 | GRAS-type transcription factor & original description:... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g00898 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g06827 | PAT1 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g13520 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g12997 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g13669 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g03424 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g03441 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g19426 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g02729 | PAT1 | GRAS-type transcription factor & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ehy_g16560 | PAT1 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01007007001 | SCL21 | RNA biosynthesis.transcriptional activation.GRAS... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01010007001 | SCL1 | RNA biosynthesis.transcriptional activation.GRAS... | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01014570001 | PAT1 | RNA biosynthesis.transcriptional activation.GRAS... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01037777001 | PAT1 | RNA biosynthesis.transcriptional activation.GRAS... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os07g36170.2 | PAT1, LOC_Os07g36170 | transcription factor (GRAS) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os07g39470.1 | PAT1, LOC_Os07g39470 | transcription factor (GRAS) | 0.05 | OrthoFinder output from all 47 species | |
| Len_g12269 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g17559 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g20939 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g04060 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g18488 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g28608 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_9896333g0010 | SCL1 | transcription factor (GRAS) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g10420 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g27471 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g06251 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g10124 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g19162 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g10472 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g22889 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g10322 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g11365 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g11765 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g36507 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g09018 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g16566 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g55042 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g035620.3.1 | PAT1, Solyc06g035620 | transcription factor (GRAS) | 0.06 | OrthoFinder output from all 47 species | |
| Solyc07g063940.2.1 | PAT1, Solyc07g063940 | transcription factor (GRAS) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g012510.3.1 | SCL13, Solyc11g012510 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g005340.3.1 | PAT1, Solyc12g005340 | transcription factor (GRAS) | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g07387 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g14334 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g15312 | PAT1 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g23112 | PAT1 | GRAS-type transcription factor & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e002780_P001 | PAT1, Zm00001e002780 | transcription factor (GRAS) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e010646_P001 | PAT1, Zm00001e010646 | transcription factor (GRAS) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e035384_P001 | PAT1, Zm00001e035384 | transcription factor (GRAS) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e038811_P001 | PAT1, Zm00001e038811 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005516 | calmodulin binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0007165 | signal transduction | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0015035 | protein-disulfide reductase activity | IEP | HCCA |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| MF | GO:0043531 | ADP binding | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005202 | TF_GRAS | 341 | 709 |
| No external refs found! |