1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_39955

Gb_39955 (MMP)


Aliases : MMP

Description : Matrixin-type metalloprotease


Gene families : OG0002614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002614_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39955
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00201730 MMP,... Protein degradation.peptidase families.metallopeptidase... 0.04 OrthoFinder output from all 47 species
AT1G24140 No alias Matrixin family protein 0.03 OrthoFinder output from all 47 species
AT1G59970 No alias Matrixin family protein 0.03 OrthoFinder output from all 47 species
LOC_Os02g50730.1 MMP, LOC_Os02g50730 Matrixin-type metalloprotease 0.05 OrthoFinder output from all 47 species
LOC_Os06g13180.1 MMP, LOC_Os06g13180 Matrixin-type metalloprotease 0.03 OrthoFinder output from all 47 species
LOC_Os10g40830.1 LOC_Os10g40830 Matrixin-type metalloprotease 0.02 OrthoFinder output from all 47 species
Lfl_g21228 No alias EC_3.4 hydrolase acting on peptide bond (peptidase) &... 0.04 OrthoFinder output from all 47 species
MA_10426152g0010 No alias Matrixin-type metalloprotease 0.04 OrthoFinder output from all 47 species
Solyc04g005040.1.1 Solyc04g005040 Matrixin-type metalloprotease 0.03 OrthoFinder output from all 47 species
Solyc04g005050.1.1 Solyc04g005050 Matrixin-type metalloprotease 0.05 OrthoFinder output from all 47 species
Zm00001e002324_P001 Zm00001e002324 Matrixin-type metalloprotease 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0031012 extracellular matrix IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP HCCA
BP GO:0006570 tyrosine metabolic process IEP HCCA
BP GO:0006571 tyrosine biosynthetic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 74 130
IPR001818 Pept_M10_metallopeptidase 180 337
No external refs found!