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Description : Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana (sp|q8l440|orrm1_arath : 90.9)
Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_37522 | |
| Cluster | HCCA: Cluster_34 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre09.g392350 | GRP2, ATGRP2, GR-RBP2 | Glycine-rich RNA-binding protein 2, mitochondrial... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g12373 | No alias | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g11354 | GR-RBP4, GRP4 | RNA editing factor *(ORRM3) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Lfl_g25551 | GRP2, ATGRP2, GR-RBP2 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g33178 | GR-RBP3 | RNA editing factor *(ORRM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0054.g014217 | CCR2, ATGRP7,... | not classified & original description: CDS=284-862 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g011210.4.1 | Solyc09g011210 | Organelle RRM domain-containing protein 6, chloroplastic... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g41354 | GR-RBP4, GRP4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | HCCA |
| MF | GO:0016597 | amino acid binding | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | HCCA |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| MF | GO:0043177 | organic acid binding | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 81 | 150 |
| No external refs found! |