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  5. Gb_36012

Gb_36012


Description : pectin methylesterase


Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36012

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00129p00070300 PME1, ATPME1,... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AT1G23200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 OrthoFinder output from all 47 species
AT1G53840 PME1, ATPME1 pectin methylesterase 1 0.03 OrthoFinder output from all 47 species
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 OrthoFinder output from all 47 species
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 OrthoFinder output from all 47 species
AT4G33220 PME44, ATPME44 pectin methylesterase 44 0.06 OrthoFinder output from all 47 species
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.04 OrthoFinder output from all 47 species
Adi_g006880 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aev_g09825 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.05 OrthoFinder output from all 47 species
Aev_g12203 PME1, ATPME1 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ala_g32800 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aob_g26087 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene05823.t1 Aspi01Gene05823 EC_3.1 hydrolase acting on ester bond & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene10964.t1 Aspi01Gene10964 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11209.t1 Aspi01Gene11209 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene45157.t1 ATPME2, PME2,... EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0092.g043013 No alias EC_3.1 hydrolase acting on ester bond & original... 0.05 OrthoFinder output from all 47 species
Ceric.19G055900.1 Ceric.19G055900 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dac_g22798 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Dcu_g13634 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dde_g21301 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g04854 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g09100 ATPME3, PME3 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g09868 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ehy_g15129 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g16152 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g26672 ATPME3, PME3 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g27414 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01016667001 PME1, ATPME1 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01028265001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
LOC_Os01g21034.1 ATPME3, PME3,... pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os01g65790.1 LOC_Os01g65790 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os02g54190.1 PME61, LOC_Os02g54190 pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os04g38560.1 LOC_Os04g38560 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os05g29790.1 ATPMEPCRB, LOC_Os05g29790 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os06g09340.1 LOC_Os06g09340 pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os07g49100.1 LOC_Os07g49100 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os08g34900.1 LOC_Os08g34900 pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os08g34910.1 LOC_Os08g34910 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os09g26360.1 LOC_Os09g26360 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os11g08750.1 LOC_Os11g08750 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_2017g0010 ATPMEPCRF, PMEPCRF pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_86577g0010 ATPMEPCRB pectin methylesterase 0.03 OrthoFinder output from all 47 species
Msp_g13826 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Msp_g25874 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g01365 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g22612 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Pir_g23999 ATPMEPCRA, PMEPCRA EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ppi_g01207 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000947 No alias not classified & original description: CDS=1-831 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013432 No alias EC_3.1 hydrolase acting on ester bond & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018433 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021277 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0165.g024099 No alias EC_3.1 hydrolase acting on ester bond & original... 0.06 OrthoFinder output from all 47 species
Smo114014 ATPMEPCRF, PMEPCRF Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
Solyc01g066360.3.1 Solyc01g066360 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc01g066390.4.1 Solyc01g066390 Probable pectinesterase/pectinesterase inhibitor 58... 0.03 OrthoFinder output from all 47 species
Solyc01g066410.1.1 Solyc01g066410 Pectinesterase OS=Petunia integrifolia... 0.03 OrthoFinder output from all 47 species
Solyc01g066420.3.1 Solyc01g066420 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Solyc02g014300.2.1 Solyc02g014300 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc03g083870.4.1 Solyc03g083870 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc03g123620.4.1 PME1, ATPME1,... pectin methylesterase 0.06 OrthoFinder output from all 47 species
Solyc03g123630.4.1 ATPME3, PME3,... pectin methylesterase 0.06 OrthoFinder output from all 47 species
Solyc07g017560.4.1 Solyc07g017560 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g017600.3.1 PME44, ATPME44,... pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc12g099410.2.1 Solyc12g099410 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Spa_g41609 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Zm00001e009863_P001 Zm00001e009863 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e014142_P001 Zm00001e014142 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e017515_P001 ATPME2, PME2,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e026790_P001 ATPMEPCRB, Zm00001e026790 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e034231_P001 Zm00001e034231 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e041006_P001 Zm00001e041006 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 36 181
IPR000070 Pectinesterase_cat 229 429
No external refs found!