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  5. Gb_35993

Gb_35993 (ISE2, PDE317, EMB25)


Aliases : ISE2, PDE317, EMB25

Description : RNA helicase (ISE2)


Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35993
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00178540 ISE2, PDE317,... RNA processing.organelle machineries.RNA... 0.07 OrthoFinder output from all 47 species
AT1G70070 ISE2, PDE317, EMB25 DEAD/DEAH box helicase, putative 0.04 OrthoFinder output from all 47 species
Aev_g25423 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Aop_g13240 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007647 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Ceric.18G021200.1 ISE2, PDE317,... group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g20011 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Dde_g08182 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os02g50560.1 ISE2, PDE317,... RNA helicase (ISE2) 0.05 OrthoFinder output from all 47 species
MA_1283g0010 ISE2, PDE317, EMB25 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... 0.04 OrthoFinder output from all 47 species
Mp4g01470.1 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.06 OrthoFinder output from all 47 species
Msp_g14107 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g18791 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g09563 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g08266 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026240 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Smo440019 ISE2, PDE317, EMB25 Protein modification.phosphorylation.TKL kinase... 0.03 OrthoFinder output from all 47 species
Zm00001e015769_P001 ISE2, PDE317,... RNA helicase (ISE2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 770 933
No external refs found!