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  5. Gb_34763

Gb_34763 (UBP1B)


Aliases : UBP1B

Description : mRNA-binding regulatory factor (UBP1)


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34763
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Adi_g082035 UBP1A stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Aob_g08315 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01015040001 UBP1B Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
Mp1g10220.1 UBP1B mRNA-binding regulatory factor (UBP1) 0.02 OrthoFinder output from all 47 species
Pnu_g07308 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Spa_g55638 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 271 337
IPR000504 RRM_dom 135 205
No external refs found!