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  5. Gb_34541

Gb_34541 (CBF5, AtCBF5, NAP57, AtNAP57)


Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : pseudouridine synthase component Nap57/CBF5 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex


Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34541

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00253700 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder output from all 47 species
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.04 OrthoFinder output from all 47 species
Als_g01903 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Ceric.39G058700.1 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.10 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 OrthoFinder output from all 47 species
Cre03.g172950 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 OrthoFinder output from all 47 species
Ehy_g09120 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
GSVIVT01034188001 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.07 OrthoFinder output from all 47 species
Lfl_g10584 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.04 OrthoFinder output from all 47 species
MA_27456g0030 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species
Mp4g12650.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 OrthoFinder output from all 47 species
Solyc02g081810.4.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002478 PUA 290 362
IPR002501 PsdUridine_synth_N 103 219
IPR012960 Dyskerin-like 42 99
IPR032819 TruB_C 220 286
No external refs found!