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  5. Gb_31122

Gb_31122


Description : Protein BTR1 OS=Arabidopsis thaliana (sp|q9lz82|btr1_arath : 81.3)


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_31122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00235910 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00099p00056810 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G33680 No alias KH domain-containing protein 0.03 OrthoFinder output from all 47 species
AT2G25970 No alias KH domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g077319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g105498 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g08425 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12066 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g72516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72682 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G027700.1 Ceric.03G027700 not classified & original description: pacid=50573278... 0.03 OrthoFinder output from all 47 species
Ceric.20G036400.1 Ceric.20G036400 not classified & original description: pacid=50567078... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.157 No alias Protein BTR1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre06.g250800 No alias No description available 0.01 OrthoFinder output from all 47 species
Ehy_g02873 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g03956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036378001 No alias No description available 0.07 OrthoFinder output from all 47 species
Len_g24459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59778 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_13061g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g17013 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g17404 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38566 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000424 No alias not classified & original description: CDS=117-1961 0.02 OrthoFinder output from all 47 species
Solyc11g040370.2.1 Solyc11g040370 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc12g095960.3.1 Solyc12g095960 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g07129 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e014452_P001 Zm00001e014452 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e024927_P001 Zm00001e024927 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029163_P001 Zm00001e029163 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 139 205
IPR004088 KH_dom_type_1 234 301
No external refs found!