Gb_30836 (ATRNS1, RNS1)

Aliases : ATRNS1, RNS1

Description : Ribonuclease 1 OS=Arabidopsis thaliana (sp|p42813|rns1_arath : 172.0)

Gene families : OG0001771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001771_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_30836
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00262550	evm_27.TU.AmTr_v1...	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.03	OrthoFinder output from all 47 species
AT1G26820	RNS3	ribonuclease 3	0.07	OrthoFinder output from all 47 species
Aop_g15509	No alias	T2-type RNase *(RNS) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene00279.t1	ATRNS1, RNS1,...	T2-type RNase *(RNS) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g08595	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g09371	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g11678	RNS2	T2-type RNase *(RNS) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01010088001	No alias	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.03	OrthoFinder output from all 47 species
GSVIVT01019974001	ATRNS1, RNS1	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.09	OrthoFinder output from all 47 species
LOC_Os01g67190.1	RNS2, LOC_Os01g67190	Ribonuclease 2 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os07g43670.1	ATRNS1, RNS1,...	Ribonuclease 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
LOC_Os08g33710.1	RNS3, LOC_Os08g33710	Extracellular ribonuclease LE OS=Solanum lycopersicum...	0.02	OrthoFinder output from all 47 species
LOC_Os09g36700.1	LOC_Os09g36700	Ribonuclease 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10284254g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_10433186g0010	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_4032367g0010	RNS3	Ribonuclease 3 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
MA_8445917g0010	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
MA_95383g0020	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Ore_g03541	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.02	OrthoFinder output from all 47 species
Smo407198	No alias	No description available	0.03	OrthoFinder output from all 47 species
Solyc04g005640.3.1	Solyc04g005640	Intracellular ribonuclease LX OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc05g007940.3.1	ATRNS1, RNS1,...	Intracellular ribonuclease LX OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc05g007950.4.1	ATRNS1, RNS1,...	Extracellular ribonuclease LE OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc07g006560.3.1	Solyc07g006560	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc09g020110.3.1	RNS2, Solyc09g020110	Ribonuclease 2 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Zm00001e004122_P001	RNS3, Zm00001e004122	Ribonuclease 3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016849	phosphorus-oxygen lyase activity	None	Extended
MF	GO:0033897	ribonuclease T2 activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004478	methionine adenosyltransferase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001568	RNase_T2-like	89	220

External Links

No external refs found!

Gb_30836 (ATRNS1, RNS1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation