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  5. Gb_30397

Gb_30397


Description : no hits & (original description: none)


Gene families : OG0001992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001992_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30397
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00052660 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g076988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09059 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0487.g073451 No alias not classified & original description: CDS=405-3596 0.03 OrthoFinder output from all 47 species
Ceric.21G076500.1 Ceric.21G076500 not classified & original description: pacid=50604105... 0.03 OrthoFinder output from all 47 species
Dac_g09710 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g06340.1 LOC_Os03g06340 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g36487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08781 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039004_P001 Zm00001e039004 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 643 777
No external refs found!