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  5. Gb_29350

Gb_29350


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 141.0)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29350
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g046450 ORF120 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33527.t1 Aspi01Gene33527 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47482.t1 Aspi01Gene47482 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g42054 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_00288 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_00777 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_04010 ORF170 Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Gb_05294 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_05523 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_06978 ORF145A Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_10322 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_13962 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_22057 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_26975 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_27945 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_29919 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_30261 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_30314 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_34551 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Gb_38048 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_38136 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_39185 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_40384 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Len_g27574 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0046658 obsolete anchored component of plasma membrane IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 66 167
IPR025724 GAG-pre-integrase_dom 3 52
No external refs found!