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  5. Gb_28622

Gb_28622


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 142.0)


Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28622

Target Alias Description ECC score Gene Family Method Actions
Adi_g005524 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g020885 ORF120 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g033062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g034813 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06215 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g10343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17934 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g20173 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g20174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g20454 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g21140 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g21181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21814 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g23483 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g23743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24238 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g24710 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g24711 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g25032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g25366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g28754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g28806 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g29144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g29145 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g29830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g30250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30379 ORF120 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g30561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g31116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g31745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32460 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32673 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g33411 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g34131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34212 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35133 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g35267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35410 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g35523 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g35586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37282 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g38076 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g38158 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g39312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g40164 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g41008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g42623 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g43097 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g43206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g44945 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g46334 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g47180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g47641 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g47727 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g48480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g48749 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g49200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g49307 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g49382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g49549 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g43236 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g48470 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g62683 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04064 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17181 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g18248 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g19973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31873 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g37429 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g38720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g56892 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g60372 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g62153 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g67404 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g70908 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene03618.t1 Aspi01Gene03618 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene05115.t1 Aspi01Gene05115 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07917.t1 Aspi01Gene07917 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09121.t1 Aspi01Gene09121 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene09209.t1 Aspi01Gene09209 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10479.t1 Aspi01Gene10479 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11135.t1 Aspi01Gene11135 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13677.t1 ORF120, Aspi01Gene13677 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17668.t1 Aspi01Gene17668 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18956.t1 Aspi01Gene18956 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20922.t1 Aspi01Gene20922 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene21324.t1 Aspi01Gene21324 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene25053.t1 Aspi01Gene25053 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27106.t1 ORF120, Aspi01Gene27106 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29256.t1 Aspi01Gene29256 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29405.t1 Aspi01Gene29405 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29587.t1 Aspi01Gene29587 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30383.t1 Aspi01Gene30383 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene31147.t1 Aspi01Gene31147 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene32979.t1 Aspi01Gene32979 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37237.t1 Aspi01Gene37237 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39004.t1 Aspi01Gene39004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43084.t1 Aspi01Gene43084 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50918.t1 Aspi01Gene50918 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene51536.t1 Aspi01Gene51536 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51841.t1 Aspi01Gene51841 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53488.t1 ORF120, Aspi01Gene53488 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60028.t1 Aspi01Gene60028 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61534.t1 Aspi01Gene61534 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62153.t1 Aspi01Gene62153 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67798.t1 Aspi01Gene67798 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15414 ORF120 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32961 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g57403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g71877 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G078900.1 Ceric.18G078900 not classified & original description: pacid=50621464... 0.04 OrthoFinder output from all 47 species
Ceric.22G064900.1 Ceric.22G064900 not classified & original description: pacid=50615421... 0.04 OrthoFinder output from all 47 species
Ceric.26G005100.1 Ceric.26G005100 not classified & original description: pacid=50599438... 0.04 OrthoFinder output from all 47 species
Dac_g11682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g16402 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g18112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g31363 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14663 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g18785 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36173 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g41176 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g41908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46287 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46700 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g51742 ORF120 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g18042 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g13801 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15368 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g16273 ORF120 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18932 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g24268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27293 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29078 ORF120 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g31087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g31743 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_03731 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_08666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 OrthoFinder output from all 47 species
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_20680 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 OrthoFinder output from all 47 species
Gb_21972 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_27233 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_29064 CRK8 Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_29919 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_30542 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 OrthoFinder output from all 47 species
Gb_36581 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 OrthoFinder output from all 47 species
Gb_39221 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 OrthoFinder output from all 47 species
Len_g06736 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g23932 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g39061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g58031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10135 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g10672 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10768 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g33821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g34647 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g41064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05067 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44476 ORF120 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58896 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g62172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c20_3370V3.1 Pp3c20_3370 No annotation 0.05 OrthoFinder output from all 47 species
Pp3c23_12080V3.1 Pp3c23_12080 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c24_850V3.1 Pp3c24_850 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c26_13990V3.1 Pp3c26_13990 Polynucleotidyl transferase, ribonuclease H-like... 0.02 OrthoFinder output from all 47 species
Pp3c3_24160V3.1 Pp3c3_24160 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c3_24220V3.1 Pp3c3_24220 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c4_27890V3.1 Pp3c4_27890 No annotation 0.04 OrthoFinder output from all 47 species
Pp3c4_780V3.1 Pp3c4_780 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c9_1820V3.1 Pp3c9_1820 No annotation 0.01 OrthoFinder output from all 47 species
Ppi_g16309 ORF120 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g47996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g20013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09460 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17073 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 144 234
IPR025724 GAG-pre-integrase_dom 79 130
No external refs found!