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  5. Gb_27893

Gb_27893 (ATRNS1, RNS1)


Aliases : ATRNS1, RNS1

Description : Ribonuclease 1 OS=Arabidopsis thaliana (sp|p42813|rns1_arath : 281.0)


Gene families : OG0001771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27893
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00084600 evm_27.TU.AmTr_v1... Ribonuclease 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G26820 RNS3 ribonuclease 3 0.04 OrthoFinder output from all 47 species
Aop_g15509 No alias T2-type RNase *(RNS) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g18235 No alias T2-type RNase *(RNS) & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os07g43670.1 ATRNS1, RNS1,... Ribonuclease 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g33710.1 RNS3, LOC_Os08g33710 Extracellular ribonuclease LE OS=Solanum lycopersicum... 0.02 OrthoFinder output from all 47 species
MA_10284254g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10433186g0010 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10433186g0020 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_4032367g0010 RNS3 Ribonuclease 3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_8445917g0010 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp2g08570.1 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g44320 ATRNS1, RNS1 T2-type RNase *(RNS) & original description: none 0.02 OrthoFinder output from all 47 species
Smo407198 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc04g005640.3.1 Solyc04g005640 Intracellular ribonuclease LX OS=Solanum lycopersicum... 0.06 OrthoFinder output from all 47 species
Solyc05g007940.3.1 ATRNS1, RNS1,... Intracellular ribonuclease LX OS=Solanum lycopersicum... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA

No InterPro domains available for this sequence

No external refs found!