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  5. Gb_25624

Gb_25624 (RAD4, ATRAD4)


Aliases : RAD4, ATRAD4

Description : DNA repair protein (XPC)


Gene families : OG0004861 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004861_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_25624
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Aob_g05355 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0132.g049198 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: CDS=51-3317 0.03 OrthoFinder output from all 47 species
Dcu_g10343 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01030782001 RAD4, ATRAD4 DNA damage response.DNA repair mechanisms.nucleotide... 0.04 OrthoFinder output from all 47 species
LOC_Os08g33082.1 RAD4, ATRAD4,... DNA repair protein (XPC) 0.02 OrthoFinder output from all 47 species
Ppi_g32348 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc11g011150.2.1 RAD4, ATRAD4,... DNA repair protein (XPC) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
InterPro domains Description Start Stop
IPR018327 BHD_2 814 877
IPR018325 Rad4/PNGase_transGLS-fold 542 659
IPR018328 Rad4_beta-hairpin_dom3 884 956
IPR002931 Transglutaminase-like 314 358
IPR018326 Rad4_beta-hairpin_dom1 762 810
No external refs found!