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Gb_24979


Description : SSU processome assembly factor (UTP21)


Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24979
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT4G04940 No alias transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Adi_g103599 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Ceric.19G039200.1 Ceric.19G039200 SSU processome assembly factor *(UTP21) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.51 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre10.g466250 No alias No description available 0.05 OrthoFinder output from all 47 species
Dcu_g02020 No alias SSU processome assembly factor *(UTP21) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g18111 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01034133001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os06g43690.1 LOC_Os06g43690 SSU processome assembly factor (UTP21) 0.11 OrthoFinder output from all 47 species
Len_g28360 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Mp3g13780.1 No alias SSU processome assembly factor (UTP21) 0.05 OrthoFinder output from all 47 species
Msp_g32547 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Solyc01g087670.3.1 Solyc01g087670 SSU processome assembly factor (UTP21) 0.09 OrthoFinder output from all 47 species
Tin_g11820 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e037473_P002 Zm00001e037473 SSU processome assembly factor (UTP21) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007319 SSU_processome_Utp21 684 915
IPR001680 WD40_repeat 549 585
IPR001680 WD40_repeat 472 502
IPR024977 Apc4_WD40_dom 190 276
No external refs found!