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  5. Gb_24188

Gb_24188


Description : calcium-permeable channel (OSCA)


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24188

Target Alias Description ECC score Gene Family Method Actions
AT1G32090 No alias early-responsive to dehydration stress protein (ERD4) 0.03 OrthoFinder output from all 47 species
AT3G54510 No alias Early-responsive to dehydration stress protein (ERD4) 0.02 OrthoFinder output from all 47 species
Azfi_s0199.g057474 ERD4 not classified & original description: CDS=1-558 0.03 OrthoFinder output from all 47 species
Cba_g26928 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27537 No alias calcium-permeable channel *(OSCA) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g07879 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17232 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40944 No alias calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12509 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009282001 RXW8 Solute transport.channels.OSCA calcium-permeable channel 0.03 OrthoFinder output from all 47 species
Len_g05384 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15514 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g28172 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
MA_125601g0010 ERD4 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
MA_47699g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_630721g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g05890.1 HYP1, ATHYP1 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Pir_g17063 No alias calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000924 ERD4 calcium-permeable channel *(OSCA) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g036260.4.1 Solyc02g036260 calcium-permeable channel (OSCA) 0.05 OrthoFinder output from all 47 species
Solyc04g077400.4.1 RXW8, Solyc04g077400 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Solyc07g048110.4.1 Solyc07g048110 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Solyc08g076310.3.1 Solyc08g076310 calcium-permeable channel (OSCA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR003864 CSC1/OSCA1-like_7TM 372 644
IPR027815 CSC1/OSCA1-like_cyt 199 361
IPR032880 Csc1/OSCA1-like_N 7 178
No external refs found!