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Aliases : PUM1, APUM1
Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 580.0)
Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_23280 | |
| Cluster | HCCA: Cluster_134 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00012p00251030 | APUM2, PUM2,... | Pumilio homolog 2 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00025p00181800 | PUM5, APUM5,... | Pumilio homolog 5 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AT3G20250 | PUM5, APUM5 | pumilio 5 | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g010436 | APUM2, PUM2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g18146 | APUM2, PUM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g30394 | PUM1, APUM1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G068300.1 | APUM2, PUM2,... | not classified & original description: pacid=50621207... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g25094 | PUM1, APUM1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01016236001 | APUM4, PUM4 | Pumilio homolog 4 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g32210.1 | APUM6, PUM6,... | Pumilio homolog 5 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_42218g0010 | PUM1, APUM1 | Pumilio homolog 1 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g06503 | APUM2, PUM2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo1983 | APUM4, PUM4 | Pumilio homolog 1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Smo86145 | APUM4, PUM4 | Pumilio homolog 1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e016242_P002 | PUM1, APUM1,... | Pumilio homolog 4 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001313 | Pumilio_RNA-bd_rpt | 823 | 854 |
| IPR001313 | Pumilio_RNA-bd_rpt | 931 | 963 |
| IPR001313 | Pumilio_RNA-bd_rpt | 750 | 779 |
| IPR001313 | Pumilio_RNA-bd_rpt | 1011 | 1042 |
| IPR001313 | Pumilio_RNA-bd_rpt | 967 | 998 |
| IPR001313 | Pumilio_RNA-bd_rpt | 895 | 924 |
| IPR001313 | Pumilio_RNA-bd_rpt | 793 | 817 |
| IPR001313 | Pumilio_RNA-bd_rpt | 859 | 890 |
| IPR012940 | NABP | 346 | 748 |
| No external refs found! |