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  5. Gb_23100

Gb_23100


Description : subunit beta of cargo adaptor F-subcomplex


Gene families : OG0002649 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00238440 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.09 OrthoFinder output from all 47 species
AT4G31480 No alias Coatomer, beta subunit 0.17 OrthoFinder output from all 47 species
AT4G31490 No alias Coatomer, beta subunit 0.12 OrthoFinder output from all 47 species
Adi_g005793 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Adi_g059781 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Adi_g109510 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Aev_g08571 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Ala_g12957 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Als_g16565 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Als_g31327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05342 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
Aop_g08029 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0279.g062259 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.08 OrthoFinder output from all 47 species
Ceric.04G093900.1 Ceric.04G093900 subunit beta of cargo adaptor F-subcomplex & original... 0.1 OrthoFinder output from all 47 species
Ceric.24G063400.1 Ceric.24G063400 subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.156 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Cre04.g217921 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Dcu_g03132 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01035511001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.12 OrthoFinder output from all 47 species
LOC_Os01g17430.1 LOC_Os01g17430 subunit beta of cargo adaptor F-subcomplex 0.09 OrthoFinder output from all 47 species
LOC_Os11g07280.1 LOC_Os11g07280 subunit beta of cargo adaptor F-subcomplex 0.13 OrthoFinder output from all 47 species
Len_g12104 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.08 OrthoFinder output from all 47 species
Lfl_g04220 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.06 OrthoFinder output from all 47 species
MA_10431517g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.04 OrthoFinder output from all 47 species
MA_10432097g0010 No alias Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_10432097g0020 No alias subunit beta of cargo adaptor F-subcomplex 0.04 OrthoFinder output from all 47 species
MA_230138g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.04 OrthoFinder output from all 47 species
MA_704359g0010 No alias Coatomer subunit beta-1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp5g08450.1 No alias subunit beta of cargo adaptor F-subcomplex 0.13 OrthoFinder output from all 47 species
Msp_g15814 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Nbi_g02428 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.07 OrthoFinder output from all 47 species
Ore_g05742 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
Ore_g17455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30253 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g17439 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Sam_g19453 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Smo160340 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Solyc01g007150.3.1 Solyc01g007150 subunit beta of cargo adaptor F-subcomplex 0.12 OrthoFinder output from all 47 species
Solyc10g081920.2.1 Solyc10g081920 subunit beta of cargo adaptor F-subcomplex 0.13 OrthoFinder output from all 47 species
Spa_g12851 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
Spa_g56532 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Tin_g04740 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e009041_P001 Zm00001e009041 subunit beta of cargo adaptor F-subcomplex 0.09 OrthoFinder output from all 47 species
Zm00001e017416_P001 Zm00001e017416 subunit beta of cargo adaptor F-subcomplex 0.12 OrthoFinder output from all 47 species
Zm00001e025465_P001 Zm00001e025465 subunit beta of cargo adaptor F-subcomplex 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 20 482
IPR029446 COPB1_appendage_platform_dom 818 945
IPR011710 Coatomer_bsu_C 674 813
No external refs found!