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  5. Gb_23048

Gb_23048 (PWP2, ATPWP2)


Aliases : PWP2, ATPWP2

Description : SSU processome assembly factor (UTP1/PWP2)


Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23048

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00059990 PWP2, ATPWP2,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.08 OrthoFinder output from all 47 species
Adi_g022769 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Aev_g07968 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Ala_g02565 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
Ceric.39G059700.1 PWP2, ATPWP2,... SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g254150 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Dcu_g01964 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g10263 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01017243001 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
LOC_Os05g44320.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.08 OrthoFinder output from all 47 species
Lfl_g05701 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
MA_138254g0010 PWP2, ATPWP2 Periodic tryptophan protein 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp1g17900.1 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.07 OrthoFinder output from all 47 species
Ore_g29636 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Ore_g35917 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
Smo80929 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc03g120080.4.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.08 OrthoFinder output from all 47 species
Spa_g18868 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 515 551
IPR001680 WD40_repeat 600 637
IPR001680 WD40_repeat 132 168
IPR001680 WD40_repeat 475 508
IPR001680 WD40_repeat 651 679
IPR007148 SSU_processome_Utp12 882 987
No external refs found!