Gb_20676 (LBD1)


Aliases : LBD1

Description : transcription factor (AS2/LOB)


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20676

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00187850 LBD2,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
AMTR_s00076p00127530 LBD4,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AMTR_s00184p00044240 LBD4,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AT1G06280 LBD2 LOB domain-containing protein 2 0.04 OrthoFinder output from all 47 species
AT1G07900 LBD1 LOB domain-containing protein 1 0.03 OrthoFinder output from all 47 species
AT1G16530 LBD3, ASL9 ASYMMETRIC LEAVES 2-like 9 0.06 OrthoFinder output from all 47 species
AT1G31320 LBD4 LOB domain-containing protein 4 0.03 OrthoFinder output from all 47 species
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.04 OrthoFinder output from all 47 species
AT2G42440 No alias Lateral organ boundaries (LOB) domain family protein 0.06 OrthoFinder output from all 47 species
AT2G45410 LBD19 LOB domain-containing protein 19 0.04 OrthoFinder output from all 47 species
AT3G03760 LBD20 LOB domain-containing protein 20 0.04 OrthoFinder output from all 47 species
AT3G27650 LBD25 LOB domain-containing protein 25 0.03 OrthoFinder output from all 47 species
AT3G58190 LBD29, ASL16 lateral organ boundaries-domain 29 0.06 OrthoFinder output from all 47 species
AT5G06080 LBD33 LOB domain-containing protein 33 0.06 OrthoFinder output from all 47 species
AT5G63090 LOB Lateral organ boundaries (LOB) domain family protein 0.03 OrthoFinder output from all 47 species
Adi_g085261 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088391 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g113714 LOB AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g27571 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00489 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12790.t1 LBD4, Aspi01Gene12790 AS2/LOB-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene15025.t1 LBD19, Aspi01Gene15025 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43012.t1 AS2, Aspi01Gene43012 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52657.t1 LBD15, ASL11,... AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66498.t1 LBD4, Aspi01Gene66498 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037915 LBD20 AS2/LOB-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.14G090000.1 LBD20, Ceric.14G090000 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g46319 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003546001 LBD10 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01004323001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01016328001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01016330001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01016332001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01016335001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
GSVIVT01024662001 LBD12, ASL5, PCK1 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01027620001 LBD19 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.08 OrthoFinder output from all 47 species
GSVIVT01029979001 LBD20 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01032592001 LBD27, SCP RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
Gb_23688 LBD15, ASL11 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Gb_23794 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Gb_25346 LBD4 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Gb_38978 LBD15, ASL11 transcription factor (AS2/LOB) 0.08 OrthoFinder output from all 47 species
Gb_40684 LBD11 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Gb_40685 LBD11 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
LOC_Os01g14030.1 LBD2, LOC_Os01g14030 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
LOC_Os03g05500.1 LBD29, ASL16,... transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
LOC_Os03g17810.1 LBD11, LOC_Os03g17810 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os10g07510.1 LBD18, LOC_Os10g07510 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
LOC_Os11g01550.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os12g01550.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Len_g54303 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_101817g0010 LBD29, ASL16 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
MA_10430986g0010 LBD15, ASL11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_10434193g0010 LBD1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_170369g0010 LBD1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_170661g0010 LBD1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_41152g0010 LBD4 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
MA_445236g0010 LBD1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_66501g0010 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
MA_88659g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9839150g0010 LBD1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mp7g17250.1 LBD15, ASL11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Msp_g28887 LOB AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44922 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43400 LBD22 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43401 No alias AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g00307 AS2 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_27900V3.1 LBD20, Pp3c3_27900 LOB domain-containing protein 20 0.02 OrthoFinder output from all 47 species
Ppi_g09676 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g26093 LBD25 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g091400.3.1 LBD19, Solyc01g091400 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc01g091420.2.1 LBD18, Solyc01g091420 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Solyc02g086480.1.1 LOB, Solyc02g086480 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Solyc06g050950.3.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc06g083930.2.1 LBD16, ASL18,... transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Solyc11g045530.3.1 LBD4, Solyc11g045530 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Solyc12g010810.1.1 LBD2, Solyc12g010810 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Spa_g29522 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40992 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03878 LOB AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32137 LOB AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e001031_P001 LBD18, Zm00001e001031 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e016785_P005 LOB, Zm00001e016785 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Zm00001e019686_P001 LBD20, Zm00001e019686 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e028582_P007 AS2, Zm00001e028582 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e030195_P001 LBD2, Zm00001e030195 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e038582_P001 LBD18, Zm00001e038582 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 18 116
No external refs found!